What are the 4 parts of the microscope?
fine adjustment
coarse adjustment
objective lenses
ocular
bigger notch
coarse adjustment
smaller notch
fine adjustment
objective lenses
oculars
what is it and what is it used for?
stage micrometer
1 space = 10 micrometers (Ī¼m)
used to convert pixels to micrometers
define total magnification
ocular magnification x objective magnification (multiply objective lens magnification by 10)
define working distance
space between objective lens and slide
the greater the magnification the less working distance
field of view
amount of space that can be seen
the greater the magnification the smaller field of view
what to do when finished with microscope
turn off
rotate to 4x objective
what is the software used with microscope?
LAS EZ
independent variable
variable you manipulate in experiment (changes)
dependent variable
variable you measure to see if there was an effect
potentially confounding variables
factors that are kept constant b/c they may change results
null hypothesis
āthere is no effect of independent variable on dependent variableā
Ex: there is no effect of music on studying habits
alternative hypothesis
āindependent will have blank affect on dependent variableā
controlled experiment
changing one factor and observing its affect on another while keeping all other factors constant
how to calculate size of cell given scale + length of cell in pixels or # of spaces of stage micrometer
scale = line distance / known distance
what is scale when determining cell size?
pixels/unit
what is line distance when determining cell size?
size measured of cell in pixels
what is known distance when determining cell size?
# of spaces x 10 Ī¼m
what is the size difference between prokaryotic and eukaryotic cells
eukaryote is 6.642 times bigger than the prokaryote
explain paper chromatography
isolates pigment molecules from leaves of plant
uses properties of molecules to separate the 4 pigment molecules
carotenes
xanthophylls
chlorophyll a
chlorophyll b
uses non-polar solvent to dissolve non-polar pigments
the higher it travels up the paper, the more polar/non polar it is (depends on the solvent)
what would happen if water was used as solvent in paper chromatography?
Pigments would not dissolve and remain at the origin because water is polar
what would happen if pigment line is submerged in solvent in paper chromatography?
pigments will dissolve in solvent (leaves green liquid in jar)
how to calculate Rf value?
distance of pigment from origin / distance of solvent from origin
what does Rf value tell you about solubility?
Greater = more soluble
smaller = less soluble
what does Rf value tell you about polarity?
if solvent is polar, the higher it is the more polar it is
if solvent is non-polar, the higher it is the more non-polar it is
how does color of pigment relate to absorbance spectrum in chromatography?
colors with no peaks are the colors reflected (we see the reflected color)
What is purpose of setting the scale in imageJ?
To convert pixels into micrometers so that we can measure cells at any magnification.
what pipettes are used with green pump?
5mL
10mL
what pipettes are used with blue pump?
2 mL
How to use 2 mL pipette?
draw liquid up to 0 mL mark
dispense to # needed
5 Steps to extract DNA from strawberries?
mash strawberry
add DNA extraction buffer
Filter
Meat tenderizer
alcohol
Purpose of mashing strawberry step
replicate breaking cell/disturbing membrane
purpose of adding DNA extraction buffer step
soap: breaks down cell membrane
salt: stabilizes DNA molecules and removes proteins bound to DNA
purpose of filter step
remove large cellular debris (cell membrane/organelles)
purpose of meat tenderizer step?
releases DNA by breaking down histone proteins with digestive enzymes
purpose of alcohol step?
DNA is not soluble in alcohol and will be able to be picked up.
How to determine purity of DNA sample from A260/A280 ratio?
pure DNA sample has ratio of 1.8
lower ratio = protein impurities
describe structure of nucleotide and its 3 main components
monomer of nucleic acids (like DNA/RNA)
contains 3 bases: nitrogenous, sugar, phosphate group
describe nitrogenous base
5 types: adenine, guanine, cytosine, thymine, uracil
contains genetic information
describe sugar base
pentose (5 carbon) sugar
backbone of nucleotide
deoxyribose/ribose
describe phosphate group
attached to sugar molecule
4 phosphate 1 oxygen
negative charge stabilizes structure of nucleic acid
what type of bond connects components of a nucleotide
2 covalent bonds:
glycosdic
phosphodiester
covalent bond stronger than hydrogen bonds
what type of bond connects complementary bases?
hydrogen bonds, weaker than covalent bonds
identify complementary base pairs
A-T : two hydrogen bonds
C-G : three hydrogen bonds
what part of the DNA molecule interacts with the cellular environment and whether that part is hydrophobic or hydrophilic
sugar-phosphate backbone, which is hydrophilic
how to tell that the two strands of a DNA molecule are anti-parellel?
They run in opposite directions
you can look at the orientation of the sugar molecules in the backbone. This creates a repeating pattern of a sugar-phosphate backbone with a free 5' phosphate group at one end and a free 3' hydroxyl group at the other end.
what does red represent on dna molecule
oxygen atoms
what does yellow represent on dna molecule
phosphorus atoms
what does gray represent on dna molecule
carbon atoms
what does blue represent on dna molecule
nitrogen
what does white represent on dna molecule
hydrogen
what does grey and red central ring represent
sugar (gray + red), base (central ring)